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  • Top cofit genes for PP_4902 from Pseudomonas putida KT2440

    Oligoribonuclease
    SEED: 3'-to-5' oligoribonuclease (orn)
    KEGG: oligoribonuclease

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4880 exoribonuclease R 0.85 0.49
    2 PP_4204 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor no 0.49
    3 PP_1898 MotA/TolQ/ExbB proton channel family protein no 0.49
    4 PP_4785 conserved exported protein of unknown function no 0.48
    5 PP_4994 conserved protein of unknown function 0.30 0.47
    6 PP_4804 RlpA-like lipoprotein no 0.46
    7 PP_4471 Magnesium transporter no 0.46
    8 PP_1734 Probable septum site-determining protein MinC no 0.45
    9 PP_2402 putative Sensor histidine kinase no 0.44
    10 PP_4895 tRNA dimethylallyltransferase 0.80 0.43
    11 PP_5310 junction-specific ATP-dependent DNA helicase 0.30 0.43
    12 PP_1733 membrane ATPase of the MinC-MinD-MinE system no 0.41
    13 PP_4008 ATP-dependent serine protease no 0.40
    14 PP_1623 RNA polymerase, sigma S (sigma 38) factor no 0.39
    15 PP_4560 putative Ribonuclease BN no 0.39
    16 PP_1058 conserved protein of unknown function no 0.37
    17 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) no 0.37
    18 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.39 0.37
    19 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase no 0.37
    20 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.74 0.35

    Or look for negative cofitness