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  • Top cofit genes for PP_4900 from Pseudomonas putida KT2440

    epoxyqueuosine reductase
    SEED: Epoxyqueuosine (oQ) reductase QueG

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.63 0.49
    2 PP_1321 ClpXP protease specificity-enhancing factor no 0.47
    3 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.51 0.47
    4 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.86 0.47
    5 PP_4722 Transcription elongation factor GreA 0.77 0.46
    6 PP_0674 ADP/ATP ratio sensor and inhibitor of translation 0.66 0.45
    7 PP_2223 conserved protein of unknown function 0.29 0.41
    8 PP_0214 4-aminobutyrate aminotransferase 0.49 0.41
    9 PP_1325 putative lipoprotein 0.47 0.38
    10 PP_0247 Osmolarity sensor protein EnvZ 0.33 0.38
    11 PP_4893 GTPase HflX 0.62 0.37
    12 PP_0123 DNA polymerase I, 5 0.65 0.37
    13 PP_4710 tRNA pseudouridine 55 synthase 0.76 0.36
    14 PP_3649 Transcriptional regulator, GntR family 0.25 0.35
    15 PP_4342 flagellar synthesis regulator, putative ATPase no 0.34
    16 PP_4880 exoribonuclease R 0.50 0.33
    17 PP_4375 flagellar chaperone, inhibits premature FliC assembly 0.72 0.33
    18 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.72 0.33
    19 PP_0058 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase no 0.33
    20 PP_5064 choline dehydrogenase 0.28 0.33

    Or look for negative cofitness