• Private Fitness
  • Home
  • Find Gene
  • BLAST
  • Experiments
  • Organisms
  • Help
  • Gene
  • Fitness
  • Nearby
  • Cofit
  • Protein
  • Homologs
  • Top cofit genes for PP_4880 from Pseudomonas putida KT2440

    exoribonuclease R
    SEED: 3'-to-5' exoribonuclease RNase R
    KEGG: ribonuclease R

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5310 junction-specific ATP-dependent DNA helicase 0.87 0.57
    2 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.74 0.53
    3 PP_0123 DNA polymerase I, 5 0.81 0.52
    4 PP_4902 Oligoribonuclease 0.85 0.49
    5 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.97 0.49
    6 PP_1734 Probable septum site-determining protein MinC 0.77 0.48
    7 PP_0872 Peptide chain release factor 3 0.92 0.48
    8 PP_4342 flagellar synthesis regulator, putative ATPase 0.59 0.47
    9 PP_4204 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor 0.35 0.47
    10 PP_4546 ATP-dependent helicase HrpA 0.79 0.47
    11 PP_4124 NADH-quinone oxidoreductase subunit G 0.97 0.46
    12 PP_4697 poly(A) polymerase 0.89 0.45
    13 PP_4993 Glutathione synthetase 0.90 0.45
    14 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.44
    15 PP_1783 dTDP-glucose pyrophosphorylase 0.98 0.44
    16 PP_5294 Ribonuclease PH 0.67 0.44
    17 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.96 0.43
    18 PP_0393 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 0.59 0.43
    19 PP_4131 NADH-quinone oxidoreductase subunit N 0.95 0.43
    20 PP_1198 transcriptional regulator, Cro/CI family (higA antitoxin like) 0.25 0.42

    Or look for negative cofitness