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  • Top cofit genes for PP_4842 from Pseudomonas putida KT2440

    putative Urea ABC transporter
    SEED: Urea ABC transporter, permease protein UrtB
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1355 Muropeptide permease AmpG 0.34 0.20
    2 PP_0406 Nucleotidyltransferase family protein 0.56 0.20
    3 PP_0405 conserved protein of unknown function 0.22 0.20
    4 PP_4369 Flagellar M-ring protein 0.44 0.18
    5 PP_0434 Anhydro-N-acetylmuramic acid kinase 0.31 0.18
    6 PP_4338 Chemotaxis histidine kinase CheA no 0.18
    7 PP_4499 putative maturation enzyme no 0.17
    8 PP_4335 flagellar motor protein no 0.17
    9 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase 0.28 0.17
    10 PP_2376 Esterified fatty acid cis/trans isomerase 0.50 0.17
    11 PP_4392 chemotaxis protein methyltransferase no 0.17
    12 PP_2145 beta-N-acetylglucosaminidase 0.55 0.16
    13 PP_1778 Lipopolysaccharide ABC export system, permease protein no 0.16
    14 PP_0435 Peptidase, M23/M37 family no 0.16
    15 PP_5262 Probable multidrug resistance protein NorM no 0.16
    16 PP_1779 Lipopolysaccharide ABC export system, ATP-binding protein no 0.16
    17 PP_1764 Phosphoglycolate phosphatase 2 no 0.16
    18 PP_2425 putative transcriptional regulator, AraC family no 0.16
    19 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA 0.23 0.16
    20 PP_3063 Pyocin R2_PP, tail formation protein 0.13 0.15

    Or look for negative cofitness