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  • Top cofit genes for PP_4840 from Pseudomonas putida KT2440

    D-alanine, beta-alanine, D-serine, glycine permease
    SEED: D-serine/D-alanine/glycine transporter
    KEGG: D-serine/D-alanine/glycine transporter

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1059 Uncharacterized amino acid permease YtnA 0.37 0.45
    2 PP_0988 glycine dehydrogenase 0.59 0.29
    3 PP_0997 Sigma-54 dependent transcriptional regulator/sensory box protein no 0.28
    4 PP_3415 Transcriptional regulator, LacI family 0.80 0.27
    5 PP_4164 Alpha/beta hydrolase no 0.26
    6 PP_1021 DNA-binding transcriptional regulator 0.54 0.26
    7 PP_4948 Acyl-CoA dehydrogenase family protein no 0.24
    8 PP_0986 aminomethyltransferase no 0.24
    9 PP_2354 Sensory box histidine kinase/response regulator no 0.22
    10 PP_2356 putative Phytochrome family protein no 0.22
    11 PP_0987 L-serine dehydratase 0.75 0.21
    12 PP_0989 glycine cleavage system H protein 1 no 0.20
    13 PP_4641 putative transporter 0.71 0.20
    14 PP_2436 Transcriptional regulator, LysR family 0.23 0.19
    15 PP_4756 gamma-aminobutyrate permease no 0.19
    16 PP_1458 putative inner membrane metabolite transport protein YhjE 0.54 0.18
    17 PP_0368 putative Acyl-CoA dehydrogenase 0.37 0.18
    18 PP_2019 adhesin-associated MmpL efflux pump (from data) no 0.18
    19 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.59 0.18
    20 PP_0248 Probable alpha-L-glutamate ligase 0.35 0.18

    Or look for negative cofitness