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  • Top cofit genes for PP_4722 from Pseudomonas putida KT2440

    Transcription elongation factor GreA
    SEED: Transcription elongation factor GreA
    KEGG: transcription elongation factor GreA

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4475 succinylglutamate desuccinylase 0.57 0.53
    2 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.83 0.51
    3 PP_0123 DNA polymerase I, 5 0.59 0.47
    4 PP_4900 epoxyqueuosine reductase 0.77 0.46
    5 PP_1226 pre-queuosine 0 synthase 0.77 0.46
    6 PP_4710 tRNA pseudouridine 55 synthase 0.72 0.45
    7 PP_4939 conserved protein of unknown function 0.70 0.44
    8 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.85 0.43
    9 PP_2852 putative Sulfatase domain protein no 0.43
    10 PP_2223 conserved protein of unknown function 0.65 0.43
    11 PP_1321 ClpXP protease specificity-enhancing factor no 0.42
    12 PP_4379 Beta-ketoacyl-acyl-carrier-protein synthase I no 0.41
    13 PP_0674 ADP/ATP ratio sensor and inhibitor of translation 0.85 0.41
    14 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.44 0.41
    15 PP_0003 16S RNA methyltransferase 0.70 0.41
    16 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis 0.76 0.40
    17 PP_0247 Osmolarity sensor protein EnvZ 0.95 0.40
    18 PP_2475 Transcriptional regulator, TetR family no 0.40
    19 PP_1994 tRNA pseudouridine (38-40)synthase 0.88 0.40
    20 PP_3649 Transcriptional regulator, GntR family 0.47 0.40

    Or look for negative cofitness