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  • Top cofit genes for PP_4693 from Pseudomonas putida KT2440

    RNA polymerase-binding transcription factor DksA
    SEED: C4-type zinc finger protein, DksA/TraR family
    KEGG: DnaK suppressor protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0856 conserved lipoprotein of unknown function 0.85 0.60
    2 PP_1656 ATP:GTP 3'-pyrophosphotransferase 0.91 0.60
    3 PP_4265 DNA-binding transcriptional dual regulator no 0.54
    4 PP_1654 cysteine synthase B 0.76 0.53
    5 PP_4799 putative Muramoyltetrapeptide carboxypeptidase 0.48 0.53
    6 PP_4560 putative Ribonuclease BN 0.36 0.53
    7 PP_4964 D-erythrose 4-phosphate dehydrogenase 0.51 0.50
    8 PP_4804 RlpA-like lipoprotein no 0.49
    9 PP_4700 pantothenate synthetase 0.41 0.48
    10 PP_1353 conserved membrane protein of unknown function no 0.47
    11 PP_0393 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 0.34 0.47
    12 PP_4895 tRNA dimethylallyltransferase 0.76 0.44
    13 PP_1783 dTDP-glucose pyrophosphorylase 0.79 0.40
    14 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.68 0.40
    15 PP_2336 aconitate hydratase 1 0.65 0.39
    16 PP_1002 arginine/ornithine antiporter 0.74 0.39
    17 PP_1664 phosphoribosylglycinamide formyltransferase 1 0.72 0.39
    18 PP_0833 queuine tRNA-ribosyltransferase no 0.38
    19 PP_0998 conserved protein of unknown function no 0.38
    20 PP_2000 amidophosphoribosyl transferase 0.86 0.38

    Or look for negative cofitness