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  • Top cofit genes for PP_4670 from Pseudomonas putida KT2440

    diguanylate cyclase
    SEED: Inner membrane protein YfiN

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4959 diguanylate cyclase 0.44 0.30
    2 PP_3761 Sensor histidine kinase/response regulator no 0.30
    3 PP_2413 GGDEF family protein 0.38 0.29
    4 PP_0053 putative sulfide:quinone oxidoreductase no 0.29
    5 PP_1490 Probable biofilm formation methyltransferase WspC 0.69 0.25
    6 PP_2372 putative Periplasmic sugar-binding protein 0.53 0.24
    7 PP_0743 conserved protein with NAD(P)-binding Rossmann-fold domain no 0.23
    8 PP_1488 Methyl-accepting chemotaxis transducer 0.73 0.23
    9 PP_0672 Sensory box protein 0.54 0.22
    10 PP_0168 putative surface adhesion protein no 0.22
    11 PP_4519 Agglutination protein 0.37 0.22
    12 PP_5429 protein of unknown function no 0.21
    13 PP_0166 HlyD family secretion protein 0.45 0.21
    14 PP_0167 Toxin secretion ATP-binding protein 0.59 0.21
    15 PP_0165 GGDEF domain protein 0.51 0.21
    16 PP_1492 Sensor histidine kinase/response regulator 0.58 0.20
    17 PP_0174 conserved protein of unknown function 0.54 0.19
    18 PP_1494 Response regulator/GGDEF domain protein 0.70 0.19
    19 PP_0173 putative transcriptional factor-related protein no 0.19
    20 PP_1875 Sensor histidine kinase/response regulator no 0.18

    Or look for negative cofitness