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Cofit
Protein
Homologs
Top cofit genes for PP_4670 from
Pseudomonas putida KT2440
diguanylate cyclase
SEED: Inner membrane protein YfiN
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_4959
diguanylate cyclase
0.44
0.30
2
PP
_2413
GGDEF family protein
0.38
0.30
3
PP
_0053
putative sulfide:quinone oxidoreductase
no
0.30
4
PP
_3761
Sensor histidine kinase/response regulator
no
0.29
5
PP
_1490
Probable biofilm formation methyltransferase WspC
0.32
0.24
6
PP
_2372
putative Periplasmic sugar-binding protein
no
0.24
7
PP
_0743
conserved protein with NAD(P)-binding Rossmann-fold domain
no
0.23
8
PP
_1488
Methyl-accepting chemotaxis transducer
no
0.22
9
PP
_0168
putative surface adhesion protein
no
0.21
10
PP
_0672
Sensory box protein
0.54
0.21
11
PP
_4519
Agglutination protein
0.37
0.21
12
PP
_5429
protein of unknown function
no
0.21
13
PP
_0166
HlyD family secretion protein
0.45
0.20
14
PP
_0167
Toxin secretion ATP-binding protein
0.48
0.20
15
PP
_1492
Sensor histidine kinase/response regulator
no
0.20
16
PP
_0165
GGDEF domain protein
0.42
0.20
17
PP
_0174
conserved protein of unknown function
no
0.19
18
PP
_0173
putative transcriptional factor-related protein
no
0.19
19
PP
_1875
Sensor histidine kinase/response regulator
no
0.18
20
PP
_5645
conserved protein of unknown function
no
0.18
Or look for
negative cofitness