Top cofit genes for PP_4654 from Pseudomonas putida KT2440

tRNA/tmRNA (uracil-C(5))-methyltransferase
KEGG: tRNA (uracil-5-)-methyltransferase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4710		tRNA pseudouridine 55 synthase	0.85	0.66
2	PP_4653		adenine:H+ symporter	0.45	0.64
3	PP_0680		ATP-dependent protease-like protein	0.65	0.47
4	PP_3654		leucine-responsive regulatory protein	no	0.43
5	PP_3653		Transporter, LysE family	no	0.37
6	PP_1795		conserved protein of unknown function	no	0.36
7	PP_2245		Transcriptional regulator, Cro/CI family	0.38	0.35
8	PP_1324		putative endonuclease distantly related to archaeal Holliday junction resolvase	0.21	0.35
9	PP_5350		Transcriptional regulator, RpiR family	no	0.34
10	PP_5639		conserved exported protein of unknown function	no	0.33
11	PP_0247		Osmolarity sensor protein EnvZ	0.69	0.32
12	PP_1656		ATP:GTP 3'-pyrophosphotransferase	0.45	0.32
13	PP_1362		pyruvate kinase II	0.85	0.32
14	PP_4676		methionine sulfoxide reductase catalytic subunit	0.77	0.32
15	PP_2375		cobalamin-dependent methionine synthase	0.39	0.31
16	PP_0083		tryptophan synthase beta chain	0.40	0.31
17	PP_0980		Probable cytosol aminopeptidase	0.85	0.31
18	PP_4787		putative protein with nucleoside triphosphate hydrolase domain	0.47	0.31
19	PP_4977		5,10-methylenetetrahydrofolate reductase	0.83	0.31
20	PP_2081		putative phosphoenolpyruvate synthase regulatory protein	0.43	0.30

Or look for negative cofitness