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  • Top cofit genes for PP_4628 from Pseudomonas putida KT2440

    conserved protein of unknown function
    SEED: Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C)
    KEGG: MioC protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2333 GntR family transcriptional regulator 0.73 0.50
    2 PP_2335 methylcitrate synthase 0.75 0.42
    3 PP_3753 Transcriptional regulator, AraC family no 0.40
    4 PP_3754 Beta-ketothiolase BktB no 0.40
    5 PP_2791 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) no 0.40
    6 PP_2334 2-methylisocitrate lyase 0.62 0.40
    7 PP_2790 Sigma-54 dependent sensory box protein no 0.36
    8 PP_0057 major facilitator family transporter 0.39 0.32
    9 PP_3755 3-hydroxybutyryl-CoA dehydrogenase no 0.29
    10 PP_2793 Acyl-CoA dehydrogenase family protein no 0.27
    11 PP_4667 methylmalonate-semialdehyde dehydrogenase 0.25 0.27
    12 PP_2794 Oxidoreductase, short chain dehydrogenase/reductase family no 0.26
    13 PP_5314 Rubredoxin-NAD(+) reductase 0.65 0.25
    14 PP_0056 choline dehydrogenase no 0.23
    15 PP_4668 Transcriptional regulator, LysR family 0.29 0.23
    16 PP_0055 transcriptional regulator no 0.23
    17 PP_4666 3-hydroxyisobutyrate dehydrogenase 0.41 0.22
    18 PP_2082 phosphoenolpyruvate synthetase 0.31 0.22
    19 PP_3286 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) no 0.19
    20 PP_3491 Enoly-coenzyme A hydratase/isomerase family protein 0.34 0.18

    Or look for negative cofitness