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  • Top cofit genes for PP_4613 from Pseudomonas putida KT2440

    outer membrane ferric citrate porin
    SEED: Iron(III) dicitrate transport protein FecA @ Iron siderophore receptor protein
    KEGG: iron complex outermembrane recepter protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4611 RNA polymerase sigma-70 factor, ECF subfamily 0.58 0.62
    2 PP_1418 putative Tricarboxylate transport protein TctC 0.74 0.52
    3 PP_1420 Transcriptional regulatory protein tctD 0.74 0.50
    4 PP_1421 putative Sensor histidine kinase TctE 0.75 0.49
    5 PP_1416 putative Tricarboxylate transport protein TctA no 0.41
    6 PP_0147 Citrate transporter 0.76 0.33
    7 PP_1417 putative Tricarboxylate transport protein TctB 0.24 0.31
    8 PP_1419 tricarboxylate-specific outer membrane porin no 0.27
    9 PP_4197 Transcriptional regulator, GntR family no 0.26
    10 PP_4612 putative FecR protein 0.53 0.25
    11 PP_1598 regulatory intramembrane protein RIP zinc protease 0.40 0.24
    12 PP_3590 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) no 0.23
    13 PP_1445 carbohydrate-selective porin no 0.22
    14 PP_3527 Transcriptional regulator, TetR family 0.44 0.21
    15 PP_2475 Transcriptional regulator, TetR family no 0.21
    16 PP_3587 lipid hydroperoxide peroxidase 0.48 0.21
    17 PP_3555 putative Transmembrane sensor 0.48 0.20
    18 PP_1364 conserved exported protein of unknown function no 0.20
    19 PP_5146 RNA pyrophosphohydrolase no 0.20
    20 PP_4620 Fumarylacetoacetase 0.34 0.19

    Or look for negative cofitness