Top cofit genes for PP_4601 from Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Hydrogen peroxide-inducible genes activator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1616		formaldehyde dehydrogenase, glutathione-dependent	0.49	0.27
2	PP_3029		DNA cytosine methyltransferase family protein	no	0.22
3	PP_0691		Glutamate 5-kinase	0.32	0.22
4	PP_1292		Cyclic pyranopterin monophosphate synthase accessory protein	0.45	0.20
5	PP_1615		Transcriptional regulator, LysR family	0.36	0.19
6	PP_0988		glycine dehydrogenase	0.22	0.19
7	PP_2460		ribonucleoside hydrolase	0.47	0.19
8	PP_4639		P-loop guanosine triphosphatase-dependent zinc chaperone	no	0.19
9	PP_3828		Molybdate-binding periplasmic protein	0.42	0.19
10	PP_5352		DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex	0.29	0.19
11	PP_2789		putative Oxidoreductase	0.49	0.19
12	PP_4655		protocatechuate 3,4-dioxygenase alpha chain	no	0.19
13	PP_0413		Polyamine ABC transporter, permease protein	0.30	0.18
14	PP_4656		protocatechuate 3,4-dioxygenase beta chain	no	0.18
15	PP_4799		putative Muramoyltetrapeptide carboxypeptidase	no	0.18
16	PP_2354		Sensory box histidine kinase/response regulator	no	0.18
17	PP_0324		sarcosine oxidase subunit delta	0.51	0.18
18	PP_3736		vanillate O-demethylase oxygenase subunit	0.47	0.18
19	PP_0586		cadmium translocating P-type ATPase	0.38	0.17
20	PP_1380		3-oxoadipate enol-lactonase 2	no	0.17

Or look for negative cofitness