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  • Top cofit genes for PP_4570 from Pseudomonas putida KT2440

    conserved protein of unknown function
    SEED: Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO
    KEGG: beta-hydroxylase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0346 putative Heptose kinase WapQ 0.73 0.58
    2 PP_2163 VacJ lipoprotein 0.66 0.56
    3 PP_1627 conserved protein of unknown function no 0.54
    4 PP_0540 conserved inner membrane protein 0.63 0.53
    5 PP_0961 toluene tolerance protein 0.44 0.53
    6 PP_0960 phospholipid ABC transporter binding protein 0.48 0.51
    7 PP_1663 conserved exported protein of unknown function 0.57 0.50
    8 PP_1798 Outer membrane efflux protein no 0.50
    9 PP_0962 toluene-tolerance protein no 0.49
    10 PP_2148 transcription-repair coupling factor 0.48 0.49
    11 PP_5283 periplasmic dipeptide transport protein 0.72 0.49
    12 PP_3627 conserved protein of unknown function no 0.47
    13 PP_0066 Ribosomal RNA small subunit methyltransferase B no 0.47
    14 PP_4217 outer membrane ferripyoverdine receptor FpvA, TonB-dependent no 0.46
    15 PP_0958 phospholipid ABC transporter ATP-binding subunit 0.76 0.46
    16 PP_1871 Protease HtpX 0.37 0.46
    17 PP_5284 UPF0758 protein PP_5284 no 0.43
    18 PP_1807 2-dehydro-3-deoxyphosphooctonate aldolase no 0.43
    19 PP_1797 HlyD family secretion protein 0.42 0.43
    20 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase no 0.42

    Or look for negative cofitness