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  • Top cofit genes for PP_4542 from Pseudomonas putida KT2440

    putative ABC transporter, ATP-binding protein/permease protein
    SEED: Lipid A export ATP-binding/permease protein MsbA
    KEGG: ATP-binding cassette, subfamily B, bacterial

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2025 Exonuclease SbcD 0.53 0.28
    2 PP_2933 GSH-dependent disulfide bond oxidoreductase 0.20 0.27
    3 PP_3831 conserved protein of unknown function no 0.27
    4 PP_3770 conserved protein of unknown function no 0.25
    5 PP_3734 putative ABC transporter, permease protein no 0.24
    6 PP_0784 conserved protein of unknown function no 0.24
    7 PP_2032 putative ATPase 0.23 0.24
    8 PP_3342 nickel ABC transporter periplasmic binding protein no 0.23
    9 PP_4100 Transcriptional regulator, Cro/CI family no 0.23
    10 PP_2782 Pyridoxalphosphate dependent aminotransferase, class III 0.27 0.23
    11 PP_1824 Smr domain protein no 0.23
    12 PP_5101 coproporphyrinogen/heterocyclic compound oxidase (aerobic) no 0.23
    13 PP_4662 conserved protein of unknown function no 0.22
    14 PP_3260 DNA ligase D no 0.22
    15 PP_0882 dipeptide ABC transporter - periplasmic binding protein no 0.22
    16 PP_3178 glycerate kinase no 0.22
    17 PP_2210 LysR family transcriptional regulator 0.19 0.22
    18 PP_t29 tRNA-Ala no 0.22
    19 PP_4171 conserved exported protein of unknown function 0.28 0.22
    20 PP_2039 putative Acyl-CoA dehydrogenase no 0.22

    Or look for negative cofitness