Top cofit genes for PP_4539 from Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Transcriptional regulator, LysR family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0860		putative Sulfite reductase, flavoprotein component	no	0.18
2	PP_5179		spermidine/putrescine ABC transporter - ATP binding subunit	no	0.16
3	PP_4803		D-alanyl-D-alanine carboxypeptidase	0.29	0.15
4	PP_1224		periplasmic subunit of the TolQRA transport system	0.14	0.15
5	PP_3371		Sensor histidine kinase	no	0.15
6	PP_5177		spermidine/putrescine ABC transporter - permease subunit	0.31	0.14
7	PP_2645		magnesium transporter, ATP-dependent	no	0.14
8	PP_5322		putative metal ion transporter	no	0.14
9	PP_3002		shikimate dehydrogenase-related enzyme	no	0.14
10	PP_2714		Sensor histidine kinase	no	0.14
11	PP_1233		sulfurtransferase	0.26	0.14
12	PP_3821		UTP-glucose-1-phosphate uridylyltransferase	0.42	0.14
13	PP_5104		thiazole synthase	0.36	0.14
14	PP_1110		serine acetyltransferase	no	0.13
15	PP_2322		Major outer membrane lipoprotein	no	0.13
16	PP_1382		putative porin-encoding gene	no	0.13
17	PP_4078		conserved protein of unknown function	no	0.13
18	PP_0504		Outer membrane protein OprG	0.37	0.13
19	PP_2689		putative Endoribonuclease	no	0.13
20	PP_4940		Putative glycosyltransferase	no	0.13

Or look for negative cofitness