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  • Top cofit genes for PP_4532 from Pseudomonas putida KT2440

    ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis
    SEED: ATP-dependent RNA helicase SrmB

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4880 exoribonuclease R 0.80 0.41
    2 PP_4722 Transcription elongation factor GreA 0.76 0.40
    3 PP_5294 Ribonuclease PH 0.73 0.38
    4 PP_3649 Transcriptional regulator, GntR family 0.87 0.36
    5 PP_4124 NADH-quinone oxidoreductase subunit G 0.80 0.34
    6 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.78 0.34
    7 PP_1226 pre-queuosine 0 synthase 0.40 0.34
    8 PP_4131 NADH-quinone oxidoreductase subunit N 0.84 0.33
    9 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.35 0.33
    10 PP_4122 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E 0.77 0.33
    11 PP_4900 epoxyqueuosine reductase 0.71 0.32
    12 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.83 0.32
    13 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.32
    14 PP_0674 ADP/ATP ratio sensor and inhibitor of translation 0.79 0.31
    15 PP_1318 Cytochrome b no 0.31
    16 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 no 0.31
    17 PP_0938 conserved protein of unknown function 0.61 0.31
    18 PP_2378 Fe/S biogenesis protein NfuA 0.79 0.31
    19 PP_0123 DNA polymerase I, 5 0.74 0.30
    20 PP_4130 NADH:ubiquinone oxidoreductase, membrane subunit M 0.83 0.30

    Or look for negative cofitness