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  • Top cofit genes for PP_4522 from Pseudomonas putida KT2440

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator GbuR

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3721 arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data) 0.25 0.26
    2 PP_4524 putative Sodium-solute symporter 0.95 0.23
    3 PP_4477 N-succinylarginine dihydrolase no 0.21
    4 PP_0668 putative Transmembrane sensor no 0.20
    5 PP_1033 Sulfatase domain protein no 0.20
    6 PP_3727 Amino-acid permease RocE no 0.19
    7 PP_3260 DNA ligase D 0.33 0.19
    8 PP_4542 putative ABC transporter, ATP-binding protein/permease protein 0.20 0.19
    9 PP_3223 ABC transporter, periplasmic binding protein no 0.18
    10 PP_2641 Iron-sulfur cluster-binding protein no 0.18
    11 PP_4521 putative aerotaxis receptor no 0.18
    12 PP_4829 putative precorrin-3B synthase no 0.18
    13 PP_1458 putative inner membrane metabolite transport protein YhjE 0.51 0.17
    14 PP_5272 conserved protein of unknown function 0.41 0.17
    15 PP_2638 putative Cellulose synthase operon C protein no 0.17
    16 PP_0709 Transporter, NCS1 nucleoside transporter family 0.92 0.17
    17 PP_4523 putative Agmatinase 0.95 0.17
    18 PP_4478 N-succinylglutamate 5-semialdehyde dehydrogenase no 0.17
    19 PP_0725 conserved hypothetical TPR repeat protein 0.24 0.17
    20 PP_2458 ribokinase no 0.17

    Or look for negative cofitness