Top cofit genes for PP_4489 from Pseudomonas putida KT2440

sigma-54 dependent transcriptional regulator
SEED: Phenylalanine hydroxylase transcriptional activator PhhR
KEGG: transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4495		aromatic amino acid transport protein	0.86	0.68
2	PP_4490		phenylalanine-4-hydroxylase	0.86	0.61
3	PP_3433		4-hydroxyphenylpyruvate dioxygenase	0.90	0.51
4	PP_4621		Homogentisate 1,2-dioxygenase	0.89	0.49
5	PP_3527		Transcriptional regulator, TetR family	0.41	0.44
6	PP_3434		conserved protein of unknown function	no	0.34
7	PP_4971		putative Outer membrane-bound lytic murein transglycolase A	0.22	0.34
8	PP_1798		Outer membrane efflux protein	0.27	0.34
9	PP_3590		aromatic-amino-acid transaminase (EC 2.6.1.57) (from data)	0.57	0.34
10	PP_0066		Ribosomal RNA small subunit methyltransferase B	no	0.34
11	PP_1627		conserved protein of unknown function	no	0.33
12	PP_1866		Phospho-2-dehydro-3-deoxyheptonate aldolase	0.60	0.32
13	PP_1797		HlyD family secretion protein	0.38	0.32
14	PP_0540		conserved inner membrane protein	0.68	0.31
15	PP_4619		Maleylacetoacetate isomerase	0.70	0.30
16	PP_1790		putative Acylneuraminate cytidylyltransferase	no	0.30
17	PP_3627		conserved protein of unknown function	no	0.30
18	PP_1807		2-dehydro-3-deoxyphosphooctonate aldolase	no	0.30
19	PP_1800		Oxidoreductase Rmd	no	0.30
20	PP_1871		Protease HtpX	0.59	0.30

Or look for negative cofitness