Top cofit genes for PP_4461 from Pseudomonas putida KT2440

Major facilitator family transporter
SEED: L-Proline/Glycine betaine transporter ProP

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4429		Transcriptional regulator, GntR family	no	0.32
2	PP_4458		putative Opine ABC transporter, periplasmic binding protein	no	0.29
3	PP_1953		Oxidoreductase, short chain dehydrogenase/reductase family	no	0.29
4	PP_1775		Metallo-beta-lactamase family protein	no	0.28
5	PP_1955		Cytochrome P450 family protein	no	0.26
6	PP_1937		putative helicase	no	0.26
7	PP_5404		Transposition protein, TnsC-related protein	no	0.26
8	PP_4246		Periplasmic binding protein	no	0.26
9	PP_1954		conserved protein of unknown function	no	0.25
10	PP_2287		Phage internal core protein	no	0.25
11	PP_3680		conserved protein of unknown function	no	0.25
12	PP_4412		conserved protein of unknown function	no	0.25
13	PP_4421		putative aminotransferase	no	0.25
14	PP_1948		Benzaldehyde dehydrogenase	no	0.25
15	PP_4453		glutathione ABC transporter ATP-binding subunit	no	0.25
16	PP_4430		putative threonine dehydratase	no	0.24
17	PP_4085		putative RHS family protein	no	0.24
18	PP_4463		Carbon-nitrogen hydrolase family protein	no	0.24
19	PP_0646		conserved protein of unknown function	no	0.24
20	PP_1951		Oxidoreductase, short chain dehydrogenase/reductase family	no	0.24

Or look for negative cofitness