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  • Top cofit genes for PP_4446 from Pseudomonas putida KT2440

    putative Group II intron-encoding maturase
    SEED: Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1937 putative helicase no 0.34
    2 PP_4421 putative aminotransferase no 0.33
    3 PP_4455 glutathione ABC transporter permease subunit no 0.33
    4 PP_1955 Cytochrome P450 family protein no 0.33
    5 PP_1945 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase no 0.31
    6 PP_4429 Transcriptional regulator, GntR family no 0.31
    7 PP_4445 transposase no 0.30
    8 PP_4430 putative threonine dehydratase no 0.29
    9 PP_1934 conserved protein of unknown function no 0.28
    10 PP_4412 conserved protein of unknown function no 0.28
    11 PP_1954 conserved protein of unknown function no 0.28
    12 PP_1940 Methyl-accepting chemotaxis transducer no 0.28
    13 PP_4458 putative Opine ABC transporter, periplasmic binding protein no 0.27
    14 PP_4433 Amino acid MFS transporter no 0.27
    15 PP_3692 conserved protein of unknown function no 0.27
    16 PP_4459 transposase no 0.27
    17 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding no 0.27
    18 PP_5384 copper sensor protein no 0.27
    19 PP_1792 Glycosyl transferase, group 2 family protein no 0.26
    20 PP_3678 conserved protein of unknown function no 0.26

    Or look for negative cofitness