Top cofit genes for PP_4346 from Pseudomonas putida KT2440

D-alanine--D-alanine ligase A
SEED: D-alanine--D-alanine ligase (EC 6.3.2.4)
KEGG: D-alanine-D-alanine ligase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4455		glutathione ABC transporter permease subunit	no	0.22
2	PP_3617		conserved membrane protein of unknown function	no	0.21
3	PP_4412		conserved protein of unknown function	no	0.20
4	PP_0999		carbamate kinase	0.40	0.20
5	PP_4461		Major facilitator family transporter	no	0.19
6	PP_0920		Xenobiotic reductase B	0.25	0.19
7	PP_0130		1,6-anhydro-N-acetylmuramyl-L-alanine amidase	no	0.19
8	PP_4410		conserved protein of unknown function	no	0.19
9	PP_4297		glyoxylate carboligase	no	0.18
10	PP_4155		putative amine oxidase	no	0.18
11	PP_4463		Carbon-nitrogen hydrolase family protein	no	0.18
12	PP_4246		Periplasmic binding protein	no	0.18
13	PP_5623		conserved membrane protein of unknown function	0.30	0.18
14	PP_2503		putative 3-oxoacyl-(Acyl-carrier-protein) reductase	no	0.18
15	PP_4434		D-amino acid dehydrogenase 1 small subunit	no	0.18
16	PP_0731		phosphatidylcholine synthase	no	0.17
17	PP_4429		Transcriptional regulator, GntR family	no	0.17
18	PP_0506		putative ABC efflux transporter, permease protein	0.37	0.17
19	PP_0174		conserved protein of unknown function	no	0.17
20	PP_2236		putative hydrolase of the alpha/beta superfamily	no	0.17

Or look for negative cofitness