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  • Top cofit genes for PP_4265 from Pseudomonas putida KT2440

    DNA-binding transcriptional dual regulator
    SEED: Fumarate and nitrate reduction regulatory protein
    KEGG: CRP/FNR family transcriptional regulator, anaerobic regulatory protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0856 conserved lipoprotein of unknown function 0.65 0.72
    2 PP_1002 arginine/ornithine antiporter 0.56 0.64
    3 PP_4560 putative Ribonuclease BN 0.26 0.63
    4 PP_0998 conserved protein of unknown function no 0.62
    5 PP_1001 arginine deiminase 0.59 0.57
    6 PP_1000 ornithine carbamoyltransferase, catabolic 0.60 0.57
    7 PP_4693 RNA polymerase-binding transcription factor DksA 0.52 0.54
    8 PP_0999 carbamate kinase 0.53 0.50
    9 PP_1187 sensor protein 0.66 0.49
    10 PP_1238 putative Lipoprotein 0.32 0.43
    11 PP_5706 Sec translocation complex - SecG subunit no 0.41
    12 PP_4804 RlpA-like lipoprotein 0.69 0.39
    13 PP_4799 putative Muramoyltetrapeptide carboxypeptidase no 0.39
    14 PP_0833 queuine tRNA-ribosyltransferase 0.64 0.38
    15 PP_0855 conserved protein of unknown function 0.62 0.37
    16 PP_4895 tRNA dimethylallyltransferase 0.52 0.37
    17 PP_4204 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor no 0.37
    18 PP_1654 cysteine synthase B 0.60 0.37
    19 PP_1353 conserved membrane protein of unknown function 0.77 0.36
    20 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.78 0.35

    Or look for negative cofitness