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  • Top cofit genes for PP_4158 from Pseudomonas putida KT2440

    sensor protein
    SEED: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
    KEGG: two-component system, OmpR family, sensor histidine kinase KdpD

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0951 Ribosome hibernation promoting factor 0.83 0.38
    2 PP_0397 protein kinase 0.63 0.37
    3 PP_0395 putative type IV piliation protein 0.78 0.36
    4 PP_0396 conserved protein of unknown function 0.49 0.36
    5 PP_4591 Ribonuclease D no 0.34
    6 PP_4143 conserved protein of unknown function no 0.34
    7 PP_3484 Response regulator receiver protein no 0.33
    8 PP_1860 Organic hydroperoxide resistance transcriptional regulator 0.33 0.33
    9 PP_5502 ribosome modulation factor 0.50 0.28
    10 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 0.89 0.28
    11 PP_0109 conserved membrane protein of unknown function 0.76 0.27
    12 PP_4918 conserved protein of unknown function no 0.27
    13 PP_2862 Undecaprenyl-diphosphatase 0.43 0.27
    14 PP_0984 conserved membrane protein of unknown function 0.61 0.26
    15 PP_1318 Cytochrome b 0.87 0.26
    16 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.28 0.26
    17 PP_2645 magnesium transporter, ATP-dependent 0.23 0.26
    18 PP_1906 ribosomal large subunit pseudouridine synthase C 0.52 0.26
    19 PP_1778 Lipopolysaccharide ABC export system, permease protein no 0.25
    20 PP_1317 Ubiquinol-cytochrome c reductase iron-sulfur subunit 0.63 0.25

    Or look for negative cofitness