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  • Top cofit genes for PP_4140 from Pseudomonas putida KT2440

    lysine decarboxylase
    SEED: Lysine decarboxylase, inducible (EC 4.1.1.18)
    KEGG: lysine decarboxylase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4500 TrpH family protein no 0.17
    2 PP_0860 putative Sulfite reductase, flavoprotein component no 0.16
    3 PP_2395 Leucine-rich repeat domain protein no 0.16
    4 PP_2951 Transcriptional regulator, TetR family no 0.15
    5 PP_4220 non-ribosomal peptide synthetase (subunit of ferribactin synthase) no 0.15
    6 PP_3505 conserved protein of unknown function no 0.14
    7 PP_0703 putative Transmembrane sensor no 0.14
    8 PP_5639 conserved exported protein of unknown function no 0.14
    9 PP_5065 conserved protein of unknown function no 0.14
    10 PP_1427 RNA polymerase sigma E factor 0.33 0.14
    11 PP_5597 conserved protein of unknown function no 0.13
    12 PP_2032 putative ATPase no 0.13
    13 PP_4911 conserved protein of unknown function 0.21 0.13
    14 PP_5086 putative nuclease (SNase domain protein) no 0.13
    15 PP_1475 CAIB/BAIF family protein no 0.13
    16 PP_4743 conserved protein of unknown function no 0.13
    17 PP_0129 GGDEF domain protein 0.25 0.13
    18 PP_2377 putative acetyltransferase Act no 0.13
    19 PP_4137 putative Outer membrane siderophore receptor 0.55 0.13
    20 PP_3561 conserved membrane protein of unknown function no 0.13

    Or look for negative cofitness