Top cofit genes for PP_4136 from Pseudomonas putida KT2440

Transcriptional regulator, LuxR family
SEED: DNA-binding domain of LuxR-like proteins

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1559		Holin	no	0.16
2	PP_4997		pyrimidine operon regulatory protein/uracil phosphoribosyltransferase	no	0.16
3	PP_2150		putative Thiamine biosynthesis lipoprotein	no	0.16
4	PP_1372		conserved protein of unknown function	no	0.15
5	PP_3685		conserved protein of unknown function	no	0.15
6	PP_3907		conserved protein of unknown function	no	0.15
7	PP_3304		Multidrug resistance transporter, Bcr/CflA family	no	0.14
8	PP_4690		Rieske 2Fe-2S family protein	no	0.14
9	PP_1522		major cold shock protein	no	0.14
10	PP_5329		putative phosphate ABC transporter, periplasmic phosphate-binding protein	no	0.13
11	PP_1383		porin-like protein	no	0.13
12	PP_1842		Glutamine amidotransferase, class I	no	0.13
13	PP_0512		hypothetical protein	no	0.13
14	PP_0718		Sulfate transporter	no	0.13
15	PP_3328		putative Ring-cleaving dioxygenase	no	0.13
16	PP_5742		putative membrane protein of unknown function	no	0.13
17	PP_2749		putative Branched-chain amino acid ABC transporter, permease protein	no	0.13
18	PP_5568		conserved membrane protein of unknown function	no	0.12
19	PP_4723		Carbamoyl-phosphate synthase large chain	no	0.12
20	PP_2439		peroxiredoxin, alkylhydroperoxide reductase - small subunit	no	0.12

Or look for negative cofitness