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  • Top cofit genes for PP_4122 from Pseudomonas putida KT2440

    proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E
    SEED: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
    KEGG: NADH dehydrogenase I subunit E

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4124 NADH-quinone oxidoreductase subunit G 0.97 0.68
    2 PP_4131 NADH-quinone oxidoreductase subunit N 0.96 0.68
    3 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.98 0.67
    4 PP_4120 NADH-quinone oxidoreductase subunit B 0.97 0.66
    5 PP_4130 NADH:ubiquinone oxidoreductase, membrane subunit M 0.95 0.62
    6 PP_4129 NADH:ubiquinone oxidoreductase, membrane subunit L 0.95 0.62
    7 PP_4126 NADH-quinone oxidoreductase subunit I 0.95 0.52
    8 PP_4824 Sensor histidine kinase/response regulator no 0.47
    9 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.41
    10 PP_4546 ATP-dependent helicase HrpA no 0.39
    11 PP_5028 proline iminopeptidase no 0.39
    12 PP_2302 DNA-binding, ATP-dependent protease 0.64 0.37
    13 PP_2378 Fe/S biogenesis protein NfuA 0.69 0.36
    14 PP_1629 Protein RecA no 0.35
    15 PP_4696 Nitrogen regulation protein NR(I) 0.38 0.35
    16 PP_5294 Ribonuclease PH 0.69 0.34
    17 PP_1994 tRNA pseudouridine (38-40)synthase 0.58 0.34
    18 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.86 0.34
    19 PP_0065 NAD-binding component of TrK potassium transporter 0.60 0.34
    20 PP_5310 junction-specific ATP-dependent DNA helicase no 0.33

    Or look for negative cofitness