Top cofit genes for PP_4099 from Pseudomonas putida KT2440

two-componenent system BarA/UvrY - regulatory subunit
SEED: BarA-associated response regulator UvrY (= GacA = SirA)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1650		Sensor protein GacS	0.99	1.00
2	PP_4171		conserved exported protein of unknown function	0.66	0.77
3	PP_2231		putative permease of the drug/metabolite transporter (DMT) superfamily	0.42	0.75
4	PP_1626		DNA mismatch repair protein MutS	0.83	0.64
5	PP_1655		23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	0.52	0.60
6	PP_1656		ATP:GTP 3'-pyrophosphotransferase	0.88	0.53
7	PP_0725		conserved hypothetical TPR repeat protein	0.72	0.50
8	PP_0540		conserved inner membrane protein	0.83	0.50
9	PP_4173		Sensor histidine kinase/response regulator	0.76	0.49
10	PP_1803		UDP-sugar epimerase	0.73	0.47
11	PP_1663		conserved exported protein of unknown function	no	0.47
12	PP_5058		Carboxy-terminal-processing protease	0.80	0.46
13	PP_5114		putative adenine methyltransferase	no	0.46
14	PP_4874		50S ribosomal protein L9	0.28	0.46
15	PP_2889		putative Transmembrane regulator PrtR	0.89	0.46
16	PP_1798		Outer membrane efflux protein	no	0.46
17	PP_1113		Pyridoxal-phosphate dependent enzyme family protein	no	0.46
18	PP_4100		Transcriptional regulator, Cro/CI family	no	0.45
19	PP_1627		conserved protein of unknown function	no	0.45
20	PP_2148		transcription-repair coupling factor	0.85	0.44

Or look for negative cofitness