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  • Top cofit genes for PP_4070 from Pseudomonas putida KT2440

    conserved protein of unknown function
    SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4208 RNA polymerase sigma-70 factor, ECF subfamily no 0.24
    2 PP_1083 (2Fe-2S)-binding protein no 0.20
    3 PP_4390 flagellar basal-body rod protein FlgC no 0.18
    4 PP_3801 putative Cation ABC transporter, periplasmic cation-binding protein no 0.18
    5 PP_3128 putative Exopolysaccharide biosynthesis/transport protein no 0.17
    6 PP_4386 flagellar basal-body rod protein FlgF no 0.17
    7 PP_2808 putative Oxidoreductase no 0.17
    8 PP_4352 flagellin export apparatus, substrate specificity protein no 0.17
    9 PP_4361 Flagellar hook-length control protein FliK no 0.16
    10 PP_4391 flagellar basal-body rod protein FlgB no 0.16
    11 PP_4388 Flagellar hook protein FlgE no 0.16
    12 PP_3160 conserved protein of unknown function no 0.16
    13 PP_2077 diaminopimelate decarboxylase no 0.16
    14 PP_4250 cytochrome c oxidase subunit I, cbb3-type no 0.16
    15 PP_0652 Gluconate transporter no 0.16
    16 PP_4389 Flagellar basal-body rod modification protein FlgD no 0.15
    17 PP_3238 putative Transcriptional regulator PyrR no 0.15
    18 PP_4262 Cytochrome oxidase maturation protein, cbb3-type no 0.15
    19 PP_3803 putative Cation ABC transporter, permease protein no 0.15
    20 PP_0970 Cyanate MFS transporter no 0.15

    Or look for negative cofitness