Top cofit genes for PP_4060 from Pseudomonas putida KT2440

Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase
SEED: Alpha-amylase (EC 3.2.1.1)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4059		fused trehalose synthase B/maltokinase	0.69	0.44
2	PP_2348		Sensor histidine kinase	0.72	0.38
3	PP_4058		1,4-alpha-glucan branching enzyme	0.86	0.37
4	PP_3376		putative phosphonate dehydrogenase	0.22	0.34
5	PP_2714		Sensor histidine kinase	no	0.33
6	PP_0995		conserved membrane protein of unknown function	no	0.32
7	PP_4505		Sensor histidine kinase	0.32	0.31
8	PP_5233		ammonium transporter AmtB	0.31	0.30
9	PP_2046		Transcriptional regulator, LysR family	no	0.27
10	PP_0261		adenosine-3'(2'),5'-bisphosphate nucleotidase	0.59	0.27
11	PP_0506		putative ABC efflux transporter, permease protein	0.47	0.26
12	PP_5047		two-component system sensory histidine kinase/phosphatase GlnL/GlnG	0.39	0.26
13	PP_3453		putative Sensor protein RstB	no	0.26
14	PP_5076		L-glutamate synthase(NADPH) alpha subunit	0.35	0.25
15	PP_3790		diaminopimelate epimerase	no	0.25
16	PP_1224		periplasmic subunit of the TolQRA transport system	no	0.25
17	PP_2088		RNA polymerase sigma factor SigX	no	0.24
18	PP_5178		spermidine/putrescine ABC transporter - inner membrane subunit	no	0.24
19	PP_5075		glutamate synthase (NADPH) beta subunit	0.32	0.24
20	PP_2047		3-hydroxyacyl-CoA dehydrogenase family protein	no	0.23

Or look for negative cofitness