Top cofit genes for PP_4039 from Pseudomonas putida KT2440

transcriptional regulator, TetR family
SEED: Transcriptional regulator RutR of pyrimidine catabolism (TetR family)
KEGG: TetR/AcrR family transcriptional regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0728		conserved protein of unknown function	no	0.20
2	PP_2146		helicase SNF2/RAD54 family	no	0.19
3	PP_2739		putative Sensory box protein	no	0.19
4	PP_5536		conserved protein of unknown function with RHS repeat-associated core domain	no	0.18
5	PP_3304		Multidrug resistance transporter, Bcr/CflA family	no	0.18
6	PP_3050		conserved protein of unknown function	0.25	0.18
7	PP_4740		Type I restriction enzyme EcoAI R protein	no	0.17
8	PP_3157		Inositol monophosphatase family protein	no	0.17
9	PP_2434		conserved protein of unknown function	no	0.17
10	PP_0804		Protein secretion ABC efflux system, permease and ATP-binding protein	0.33	0.17
11	PP_3047		conserved protein of unknown function	no	0.17
12	PP_5580		protein of unknown function	no	0.17
13	PP_2363		conserved protein of unknown function	no	0.17
14	PP_2985		conserved protein of unknown function	no	0.16
15	PP_2362		putative usher protein	no	0.16
16	PP_2907		DNA-binding response regulator	no	0.16
17	PP_2556		Chromate transporter	no	0.16
18	PP_0806		putative Surface adhesion protein	no	0.16
19	PP_0803		Protein secretion ABC efflux system, membrane fusion protein	no	0.16
20	PP_2330		conserved protein of unknown function	no	0.16

Or look for negative cofitness