Top cofit genes for PP_4010 from Pseudomonas putida KT2440

DNA replication inhibitor
SEED: Cold shock protein CspD
KEGG: cold shock protein (beta-ribbon, CspA family)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3833		Response regulator	no	0.27
2	PP_1198		transcriptional regulator, Cro/CI family (higA antitoxin like)	no	0.24
3	PP_0547		UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	0.19	0.22
4	PP_4131		NADH-quinone oxidoreductase subunit N	0.24	0.21
5	PP_1328		Protein MraZ	0.28	0.21
6	PP_3731		Transcriptional regulator, TetR family	no	0.21
7	PP_3484		Response regulator receiver protein	no	0.20
8	PP_3834		conserved protein of unknown function	no	0.20
9	PP_0951		Ribosome hibernation promoting factor	0.50	0.19
10	PP_4340		response regulator for chemotactic signal transduction	no	0.18
11	PP_4120		NADH-quinone oxidoreductase subunit B	no	0.18
12	PP_5327		putative phosphate ABC transporter, permease subunit	no	0.18
13	PP_0971		conserved protein of unknown function	no	0.18
14	PP_5294		Ribonuclease PH	0.14	0.18
15	PP_5502		ribosome modulation factor	0.44	0.18
16	PP_5185		acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase	0.56	0.17
17	PP_3755		3-hydroxybutyryl-CoA dehydrogenase	no	0.17
18	PP_4977		5,10-methylenetetrahydrofolate reductase	0.58	0.17
19	PP_1351		putative 2-dehydropantoate 2-reductase	no	0.17
20	PP_4338		Chemotaxis histidine kinase CheA	no	0.17

Or look for negative cofitness