Top cofit genes for PP_4008 from Pseudomonas putida KT2440

ATP-dependent serine protease
SEED: ATP-dependent Clp protease ATP-binding subunit ClpA
KEGG: ATP-dependent Clp protease ATP-binding subunit ClpA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4342		flagellar synthesis regulator, putative ATPase	0.71	0.61
2	PP_5041		glycogen phosphorylase	0.88	0.54
3	PP_4343		Flagellar biosynthesis protein FlhF	0.35	0.52
4	PP_1364		conserved exported protein of unknown function	no	0.50
5	PP_1319		Ubiquinol--cytochrome c reductase, cytochrome c1	0.85	0.49
6	PP_0396		conserved protein of unknown function	0.95	0.48
7	PP_0397		protein kinase	0.95	0.48
8	PP_0395		putative type IV piliation protein	0.97	0.48
9	PP_1317		Ubiquinol-cytochrome c reductase iron-sulfur subunit	0.85	0.47
10	PP_4261		cation-transporting P-type ATPase	0.80	0.47
11	PP_5084		penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase	0.56	0.47
12	PP_4375		flagellar chaperone, inhibits premature FliC assembly	0.64	0.46
13	PP_1318		Cytochrome b	0.91	0.46
14	PP_4471		Magnesium transporter	0.23	0.46
15	PP_5502		ribosome modulation factor	no	0.45
16	PP_0951		Ribosome hibernation promoting factor	0.88	0.44
17	PP_4058		1,4-alpha-glucan branching enzyme	0.74	0.44
18	PP_4204		antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor	0.52	0.43
19	PP_4892		integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex	0.96	0.43
20	PP_1198		transcriptional regulator, Cro/CI family (higA antitoxin like)	0.25	0.43

Or look for negative cofitness