Top cofit genes for PP_3969 from Pseudomonas putida KT2440

Response regulator
SEED: response regulator receiver protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_5322		putative metal ion transporter	no	0.21
2	PP_3831		conserved protein of unknown function	no	0.20
3	PP_4892		integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex	no	0.19
4	PP_5352		DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex	no	0.19
5	PP_2499		conserved protein of unknown function	no	0.19
6	PP_5157		conserved exported protein of unknown function	no	0.19
7	PP_3440		conserved protein of unknown function	no	0.19
8	PP_2210		LysR family transcriptional regulator	no	0.19
9	PP_4799		putative Muramoyltetrapeptide carboxypeptidase	no	0.18
10	PP_0086		conserved protein of unknown function	no	0.18
11	PP_5166		Sigma-54 dependent transcriptional regulator	no	0.18
12	PP_2757		putative Sugar-binding protein	0.12	0.18
13	PP_2223		conserved protein of unknown function	no	0.17
14	PP_4839		putative iron-regulated membrane protein	0.43	0.17
15	PP_3447		conserved membrane protein of unknown function	no	0.17
16	PP_2694		Aldehyde dehydrogenase family protein	no	0.17
17	PP_2319		conserved protein of unknown function	0.30	0.17
18	PP_4875		conserved membrane protein of unknown function	no	0.17
19	PP_4342		flagellar synthesis regulator, putative ATPase	no	0.17
20	PP_1649		D-lactate dehydrogenase	no	0.17

Or look for negative cofitness