Top cofit genes for PP_3955 from Pseudomonas putida KT2440

permease
SEED: TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_5037		lipocalin family lipoprotein	no	0.20
2	PP_3175		putative Dioxygenase, ferredoxin reductase component	no	0.19
3	PP_0053		putative sulfide:quinone oxidoreductase	no	0.19
4	PP_4405		Sensory box protein	no	0.18
5	PP_5685		protein of unknown function	no	0.18
6	PP_4825		Membrane protein, MarC family	no	0.18
7	PP_5342		Transcriptional regulator, GntR family	no	0.18
8	PP_4650		Ubiquinol oxidase subunit II, cyanide insensitive	0.51	0.18
9	PP_2539		Transcriptional regulator, LysR family	no	0.18
10	PP_5531		conserved protein of unknown function	no	0.17
11	PP_5384		copper sensor protein	no	0.17
12	PP_4230		conserved exported protein of unknown function	no	0.17
13	PP_4541		peptidyl-prolyl cis-trans isomerase A (rotamase A)	0.18	0.17
14	PP_5556		putative bacteriophage lysis protein	no	0.16
15	PP_0314		conserved protein of unknown function	no	0.16
16	PP_3482		conserved protein of unknown function	no	0.16
17	PP_1925		putative Monooxygenase	no	0.16
18	PP_3288		Universal stress protein family	no	0.16
19	PP_1072		Leucine-rich repeat domain protein	no	0.16
20	PP_2592		Ferric siderophore ABC transporter, ATP-binding protein	no	0.15

Or look for negative cofitness