Top cofit genes for PP_3949 from Pseudomonas putida KT2440

HTH-type transcriptional repressor NicS

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1063		DNA-binding transcriptional regulator, homocysteine-binding	no	0.25
2	PP_3790		diaminopimelate epimerase	no	0.25
3	PP_4221		non-ribosomal peptide synthetase (subunit of ferribactin synthase)	no	0.24
4	PP_4922		Phosphomethylpyrimidine synthase	0.37	0.23
5	PP_3044		Phage portal protein, lambda family	no	0.23
6	PP_3733		putative ABC transporter lipoprotein	no	0.22
7	PP_5104		thiazole synthase	no	0.21
8	PP_5591		conserved protein of unknown function	no	0.21
9	PP_2851		conserved protein of unknown function	no	0.20
10	PP_4330		putative toxin-related protein	no	0.20
11	PP_3244		Magnesium transporter, MgtC family	no	0.19
12	PP_2599		Chemotaxis sensory transducer family protein	no	0.19
13	PP_0787		quinolinate phosphoribosyltransferase (decarboxylating) monomer	no	0.19
14	PP_1861		Transcriptional regulator, LysR family	no	0.19
15	PP_3788		putative Non-ribosomal peptide synthetase	no	0.19
16	PP_5134		conserved protein of unknown function	no	0.19
17	PP_2561		putative secreted hemolysin-type calcium-binding bacteriocin	no	0.19
18	PP_3786		aminotransferase	no	0.19
19	PP_1348		putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase	no	0.18
20	PP_4339		Protein phosphatase CheZ	no	0.18

Or look for negative cofitness