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  • Top cofit genes for PP_3948 from Pseudomonas putida KT2440

    nicotinate dehydrogenase subunit B (EC 1.17.2.1) (from data)
    Original annotation: nicotinate dehydrogenase subunit B
    SEED: Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3945 2,5-dihydroxypyridine 5,6-dioxygenase no 0.32
    2 PP_3944 6-hydroxynicotinate 3-monooxygenase 0.14 0.27
    3 PP_0625 Chaperone protein ClpB 0.37 0.21
    4 PP_3943 N-formylmaleamate deformylase 0.16 0.21
    5 PP_2965 putative tnpA repressor TnpC no 0.17
    6 PP_5076 L-glutamate synthase(NADPH) alpha subunit no 0.17
    7 PP_4111 Elongation factor G 2 no 0.17
    8 PP_4803 D-alanyl-D-alanine carboxypeptidase no 0.15
    9 PP_5244 Transcriptional regulator, AraC family no 0.15
    10 PP_5075 glutamate synthase (NADPH) beta subunit no 0.15
    11 PP_3941 maleamate amidohydrolase no 0.15
    12 PP_2147 conserved exported protein of unknown function no 0.15
    13 PP_3746 glycolate oxidase, putative FAD-binding subunit no 0.15
    14 PP_0205 putative Oxidoreductase no 0.15
    15 PP_3223 ABC transporter, periplasmic binding protein no 0.15
    16 PP_2525 conserved protein of unknown function no 0.14
    17 PP_3355 Beta-ketothiolase no 0.14
    18 PP_2038 long-chain-fatty-acid--CoA ligase no 0.14
    19 PP_0264 Sensor histidine kinase no 0.14
    20 PP_2244 putative transmembrane protein TauE like no 0.14

    Or look for negative cofitness