Top cofit genes for PP_3932 from Pseudomonas putida KT2440

Diguanylate cyclase
SEED: GGDEF domain protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1734		Probable septum site-determining protein MinC	0.70	0.21
2	PP_2573		conserved protein of unknown function	no	0.19
3	PP_4895		tRNA dimethylallyltransferase	0.61	0.19
4	PP_2210		LysR family transcriptional regulator	no	0.18
5	PP_0567		Biosynthetic arginine decarboxylase	0.36	0.18
6	PP_2933		GSH-dependent disulfide bond oxidoreductase	no	0.18
7	PP_5310		junction-specific ATP-dependent DNA helicase	no	0.18
8	PP_2091		putative Serine/threonine-protein kinase	no	0.18
9	PP_3582		RND efflux transporter, outer membrane protein	0.27	0.18
10	PP_2927		conserved protein of unknown function	0.36	0.18
11	PP_3192		conserved protein of unknown function	no	0.18
12	PP_2451		extracellular DNA endonuclease	no	0.17
13	PP_5153		putative isomerase/hydrolase	no	0.17
14	PP_2889		putative Transmembrane regulator PrtR	no	0.17
15	PP_2455		ribose ABC transporter - ATP-binding subunit	no	0.17
16	PP_1001		arginine deiminase	no	0.17
17	PP_2932		Amidase family protein	no	0.17
18	PP_0266		Agmatine deiminase	no	0.17
19	PP_3831		conserved protein of unknown function	no	0.17
20	PP_3155		putative Outer membrane ferric siderophore receptor	no	0.17

Or look for negative cofitness