Top cofit genes for PP_3889 from Pseudomonas putida KT2440

putative Phage integrase
SEED: phage integrase, putative

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4769		conserved protein of unknown function	no	0.23
2	PP_5112		putative processin peptidase	no	0.19
3	PP_3582		RND efflux transporter, outer membrane protein	no	0.19
4	PP_1657		modified nucleoside triphosphate pyrophosphohydrolase	no	0.18
5	PP_3894		putative Phage replication protein O	no	0.18
6	PP_5144		conserved protein of unknown function	no	0.17
7	PP_1824		Smr domain protein	no	0.16
8	PP_0676		putative Transcription elongation factor	no	0.16
9	PP_3203		Major facilitator family transporter	no	0.16
10	PP_5240		Response regulator	no	0.15
11	PP_4080		conserved protein of unknown function	no	0.15
12	PP_4004		DNA translocase FtsK	no	0.15
13	PP_4291		conserved exported protein of unknown function	no	0.15
14	PP_3950		Methyl-accepting chemotaxis transducer	no	0.15
15	PP_2118		conserved protein of unknown function	no	0.15
16	PP_2832		galactose-binding protein regulator	no	0.15
17	PP_4176		putative 5-oxo-L-prolinase	no	0.15
18	PP_1581		BNR domain protein	no	0.14
19	PP_4319		conserved exported protein of unknown function	no	0.14
20	PP_5229		conserved protein of unknown function	no	0.14

Or look for negative cofitness