Top cofit genes for PP_3779 from Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Transcriptional activator protein LysR

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3778		Pyrroline-5-carboxylate reductase	no	0.26
2	PP_3777		conserved protein of unknown function	no	0.21
3	PP_3692		conserved protein of unknown function	no	0.17
4	PP_4116		isocitrate lyase	no	0.17
5	PP_2948		Transcriptional regulator, GntR family	no	0.17
6	PP_5659		protein of unknown function	no	0.16
7	PP_2487		putative aldehyde dehydrogenase	no	0.16
8	PP_3785		conserved protein of unknown function	no	0.16
9	PP_0090		conserved exported protein of unknown function	no	0.15
10	PP_0356		malate synthase G	no	0.15
11	PP_5424		conserved protein of unknown function	no	0.15
12	PP_4921		Transporter, NCS1 nucleoside transporter family	no	0.15
13	PP_3776		putative permease (RarD protein)	no	0.14
14	PP_2137		beta-ketoadipyl CoA thiolase, beta component	no	0.14
15	PP_4085		putative RHS family protein	no	0.14
16	PP_4135		conserved protein of unknown function	no	0.14
17	PP_1048		putative protein secretion protein for export	0.10	0.14
18	PP_0556		Acetoin catabolism protein	no	0.14
19	PP_0649		MutT/nudix family protein	no	0.14
20	PP_1655		23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	0.51	0.14

Or look for negative cofitness