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  • Top cofit genes for PP_3738 from Pseudomonas putida KT2440

    putative Transcriptional regulator VanR
    SEED: Transcriptional regulator for ferulate or vanillate catabolism
    KEGG: GntR family transcriptional regulator, vanillate catabolism transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1269 Universal stress protein family no 0.15
    2 PP_4749 Amino acid ABC transporter, permease protein no 0.14
    3 PP_4953 putative oxidoreductase with FAD/NAD(P)-binding domain no 0.14
    4 PP_3613 L-sorbosone dehydrogenase no 0.14
    5 PP_4164 Alpha/beta hydrolase no 0.14
    6 PP_4054 conserved protein of unknown function no 0.13
    7 PP_5339 transcriptional regulator, ornithine utilization 0.41 0.13
    8 PP_3028 conserved protein of unknown function no 0.13
    9 PP_3571 putative Acetylornithine deacetylase no 0.12
    10 PP_1877 free methionine-(R)-sulfoxide reductase no 0.12
    11 PP_4063 putative Long-chain-fatty-acid-CoA ligase no 0.12
    12 PP_4979 putative Periplasmic binding protein no 0.12
    13 PP_4005 Leucyl/phenylalanyl-tRNA--protein transferase no 0.11
    14 PP_2394 Leucine-rich repeat domain protein 0.30 0.11
    15 PP_3788 putative Non-ribosomal peptide synthetase no 0.11
    16 PP_3448 bacteriophage N4 receptor, inner membrane subunit no 0.11
    17 PP_5709 protein of unknown function no 0.11
    18 PP_3787 conserved protein of unknown function no 0.11
    19 PP_1192 Acetyltransferase, GNAT family no 0.11
    20 PP_4219 non-ribosomal peptide synthetase no 0.11

    Or look for negative cofitness