Top cofit genes for PP_3727 from Pseudomonas putida KT2440

Amino-acid permease RocE
SEED: Arginine permease RocE
KEGG: arginine/ornithine permease

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3728		Sensor histidine kinase/response regulator	no	0.32
2	PP_5260		2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data)	no	0.31
3	PP_3593		L-lysine and D-lysine ABC transporter, substrate-binding component (from data)	no	0.29
4	PP_4493		D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data)	0.42	0.27
5	PP_0382		5-aminopentanamidase	no	0.27
6	PP_3594		L-lysine and D-lysine ABC transporter, permease component 1 (from data)	no	0.26
7	PP_5257		L-pipecolate oxidase	no	0.26
8	PP_3596		D-lysine oxidase	0.30	0.26
9	PP_5258		L-piperidine-6-carboxylate dehydrogenase	0.34	0.26
10	PP_4486		lysine / arginine / ornithine ABC transporter - periplasmic binding protein	no	0.26
11	PP_3597		L-lysine and D-lysine ABC transporter, ATPase component (from data)	no	0.25
12	PP_3595		L-lysine and D-lysine ABC transporter, permease component 2 (from data)	no	0.25
13	PP_0384		Transcriptional regulator, AsnC family	no	0.24
14	PP_3592		Transcriptional regulator, RpiR family	no	0.24
15	PP_3256		Glycosyl transferase, group 2 family protein	no	0.23
16	PP_1881		conserved protein of unknown function	no	0.23
17	PP_0383		Lysine 2-monooxygenase	no	0.22
18	PP_2025		Exonuclease SbcD	0.28	0.21
19	PP_2764		FMN reductase (NADPH)	no	0.21
20	PP_1882		conserved membrane protein of unknown function	no	0.21

Or look for negative cofitness