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  • Top cofit genes for PP_3635 from Pseudomonas putida KT2440

    putative Sulfonate ABC transporter, permease protein
    SEED: Alkanesulfonates transport system permease protein
    KEGG: sulfonate/nitrate/taurine transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4824 Sensor histidine kinase/response regulator no 0.29
    2 PP_3638 putative Acyl-CoA dehydrogenase no 0.27
    3 PP_2081 putative phosphoenolpyruvate synthase regulatory protein no 0.26
    4 PP_5311 putative signal transduction protein no 0.25
    5 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.24
    6 PP_3260 DNA ligase D no 0.23
    7 PP_0994 putative RNA polymerase sigma factor no 0.23
    8 PP_4131 NADH-quinone oxidoreductase subunit N no 0.23
    9 PP_2210 LysR family transcriptional regulator no 0.23
    10 PP_1883 protein of unknown function no 0.23
    11 PP_4120 NADH-quinone oxidoreductase subunit B 0.29 0.23
    12 PP_5236 conserved protein of unknown function no 0.22
    13 PP_2025 Exonuclease SbcD no 0.22
    14 PP_1552 putative Phage replication protein no 0.22
    15 PP_5028 proline iminopeptidase no 0.22
    16 PP_0138 conserved membrane protein of unknown function no 0.22
    17 PP_1994 tRNA pseudouridine (38-40)synthase 0.41 0.21
    18 PP_4710 tRNA pseudouridine 55 synthase 0.66 0.21
    19 PP_3555 putative Transmembrane sensor no 0.21
    20 PP_4546 ATP-dependent helicase HrpA no 0.21

    Or look for negative cofitness