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  • Top cofit genes for PP_3603 from Pseudomonas putida KT2440

    Transcriptional regulator, GntR family
    SEED: Predicted D-glucarate or D-galactorate regulator, GntR family
    KEGG: GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4699 3-methyl-2-oxobutanoate hydroxymethyltransferase no 0.40
    2 PP_0368 putative Acyl-CoA dehydrogenase 0.59 0.34
    3 PP_4993 Glutathione synthetase no 0.34
    4 PP_5085 malic enzyme B 0.59 0.34
    5 PP_1941 conserved protein of unknown function no 0.33
    6 PP_0356 malate synthase G 0.69 0.33
    7 PP_4131 NADH-quinone oxidoreductase subunit N 0.61 0.33
    8 PP_2806 Transcriptional regulator, TetR family no 0.32
    9 PP_2302 DNA-binding, ATP-dependent protease 0.44 0.31
    10 PP_4124 NADH-quinone oxidoreductase subunit G 0.62 0.31
    11 PP_1233 sulfurtransferase no 0.30
    12 PP_3507 Aerobic cobaltochelatase subunit CobN 0.49 0.30
    13 PP_4710 tRNA pseudouridine 55 synthase 0.53 0.30
    14 PP_0184 Argininosuccinate lyase 0.82 0.29
    15 PP_5035 Histidine utilization repressor 0.83 0.29
    16 PP_1675 Subunit of adenosylcobinamide-phosphate synthase beta component 0.51 0.29
    17 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.65 0.29
    18 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.73 0.29
    19 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.68 0.29
    20 PP_4696 Nitrogen regulation protein NR(I) 0.86 0.29

    Or look for negative cofitness