Top cofit genes for PP_3596 from Pseudomonas putida KT2440

D-lysine oxidase
SEED: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
KEGG: D-amino-acid dehydrogenase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3592		Transcriptional regulator, RpiR family	0.45	0.77
2	PP_3593		L-lysine and D-lysine ABC transporter, substrate-binding component (from data)	no	0.77
3	PP_3595		L-lysine and D-lysine ABC transporter, permease component 2 (from data)	no	0.76
4	PP_5257		L-pipecolate oxidase	no	0.74
5	PP_3594		L-lysine and D-lysine ABC transporter, permease component 1 (from data)	no	0.73
6	PP_5260		2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data)	0.50	0.67
7	PP_3591		Delta 1-piperideine-2-carboxylate reductase	no	0.65
8	PP_5258		L-piperidine-6-carboxylate dehydrogenase	0.48	0.65
9	PP_4493		D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data)	no	0.62
10	PP_3597		L-lysine and D-lysine ABC transporter, ATPase component (from data)	no	0.61
11	PP_0383		Lysine 2-monooxygenase	no	0.58
12	PP_0384		Transcriptional regulator, AsnC family	no	0.58
13	PP_0382		5-aminopentanamidase	no	0.54
14	PP_4108		2-aminoadipate transaminase (EC 2.6.1.39) (from data)	no	0.39
15	PP_2910		L-2-hydroxyglutarate oxidase	no	0.37
16	PP_0213		succinate-semialdehyde dehydrogenase (NADP+)	no	0.31
17	PP_0214		4-aminobutyrate aminotransferase	0.73	0.30
18	PP_0949		putative ATP-binding protein UPF0042	no	0.29
19	PP_3603		Transcriptional regulator, GntR family	0.26	0.26
20	PP_3727		Amino-acid permease RocE	no	0.26

Or look for negative cofitness