Top cofit genes for PP_3593 from Pseudomonas putida KT2440

L-lysine and D-lysine ABC transporter, substrate-binding component (from data)
Original annotation: Amino acid ABC transporter, periplasmic binding protein
SEED: Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)
KEGG: polar amino acid transport system substrate-binding protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3592		Transcriptional regulator, RpiR family	no	0.89
2	PP_3594		L-lysine and D-lysine ABC transporter, permease component 1 (from data)	0.49	0.86
3	PP_3595		L-lysine and D-lysine ABC transporter, permease component 2 (from data)	0.42	0.85
4	PP_5257		L-pipecolate oxidase	no	0.83
5	PP_5260		2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data)	0.79	0.78
6	PP_4493		D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data)	no	0.77
7	PP_3596		D-lysine oxidase	no	0.77
8	PP_5258		L-piperidine-6-carboxylate dehydrogenase	no	0.76
9	PP_3591		Delta 1-piperideine-2-carboxylate reductase	no	0.75
10	PP_3597		L-lysine and D-lysine ABC transporter, ATPase component (from data)	no	0.75
11	PP_0382		5-aminopentanamidase	no	0.68
12	PP_0383		Lysine 2-monooxygenase	no	0.67
13	PP_0384		Transcriptional regulator, AsnC family	no	0.62
14	PP_4108		2-aminoadipate transaminase (EC 2.6.1.39) (from data)	no	0.48
15	PP_2910		L-2-hydroxyglutarate oxidase	no	0.43
16	PP_4494		putative LysR-type transcriptional activator protein	no	0.35
17	PP_0213		succinate-semialdehyde dehydrogenase (NADP+)	no	0.32
18	PP_1297		putative amino-acid ABC transporter-binding protein YhdW	no	0.29
19	PP_3727		Amino-acid permease RocE	no	0.29
20	PP_0155		pyridine nucleotide transhydrogenase, beta subunit	no	0.27

Or look for negative cofitness