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Cofit
Protein
Homologs
Top cofit genes for PP_3570 from
Pseudomonas putida KT2440
carbohydrate-selective porin
SEED: Porin B precursor
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_0789
N-acetyl-anhydromuramyl-L-alanine-amidase
no
0.16
2
PP
_5283
periplasmic dipeptide transport protein
0.50
0.16
3
PP
_1702
Recombination-associated protein RdgC
no
0.16
4
PP
_5279
conserved protein of unknown function
no
0.16
5
PP
_1055
Type II secretion pathway protein GspN
no
0.15
6
PP
_0615
Branched-chain amino acid ABC transporter, ATP-binding protein
no
0.15
7
PP
_4726
Chaperone protein DnaJ
no
0.15
8
PP
_2027
conserved exported protein of unknown function
no
0.15
9
PP
_2032
putative ATPase
0.62
0.15
10
PP
_2148
transcription-repair coupling factor
no
0.15
11
PP
_1036
membrane-bound lytic murein transglycosylase F
no
0.14
12
PP
_1627
conserved protein of unknown function
no
0.14
13
PP
_1860
Organic hydroperoxide resistance transcriptional regulator
no
0.14
14
PP
_2708
conserved protein of unknown function
no
0.14
15
PP
_2147
conserved exported protein of unknown function
no
0.14
16
PP
_0361
putative Competence protein ComF
no
0.13
17
PP
_3627
conserved protein of unknown function
no
0.13
18
PP
_3897
conserved protein of unknown function
no
0.13
19
PP
_0670
Transporter, bile acid/Na+ symporter family
no
0.13
20
PP
_2028
conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat
no
0.13
Or look for
negative cofitness