Top cofit genes for PP_3538 from Pseudomonas putida KT2440

transcriptional regulator
SEED: Transcriptional regulator PobR, AraC family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3537		p-hydroxybenzoate hydroxylase	0.97	0.84
2	PP_3356		p-coumarate CoA-ligase (EC 6.2.1.12) (from data)	0.82	0.50
3	PP_3357		p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data)	0.79	0.49
4	PP_3358		hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data)	0.80	0.44
5	PP_1379		3-carboxy-cis,cis-muconate cycloisomerase	0.87	0.43
6	PP_3952		3-oxoadipate CoA-transferase subunit A	0.28	0.42
7	PP_1377		beta-ketoadipyl-CoA thiolase	0.84	0.42
8	PP_3951		3-oxoadipate CoA-transferase subunit A	0.52	0.41
9	PP_4656		protocatechuate 3,4-dioxygenase beta chain	0.89	0.39
10	PP_4655		protocatechuate 3,4-dioxygenase alpha chain	0.83	0.39
11	PP_1380		3-oxoadipate enol-lactonase 2	0.88	0.38
12	PP_1378		alpha-ketoglutarate permease	0.82	0.37
13	PP_1375		transcription regulatory protein (pca regulon)	0.87	0.37
14	PP_1713		Transcriptional regulator PcaQ	0.76	0.28
15	PP_1381		4-carboxymuconolactone decarboxylase	0.86	0.28
16	PP_3590		aromatic-amino-acid transaminase (EC 2.6.1.57) (from data)	no	0.20
17	PP_0096		oligopeptidase A	0.33	0.17
18	PP_0428		aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase	0.69	0.17
19	PP_3130		conserved exported protein of unknown function	no	0.15
20	PP_4144		Hydroxyacylglutathione hydrolase	no	0.15

Or look for negative cofitness