Top cofit genes for PP_3527 from Pseudomonas putida KT2440

Transcriptional regulator, TetR family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4489		sigma-54 dependent transcriptional regulator	0.42	0.44
2	PP_4197		Transcriptional regulator, GntR family	no	0.44
3	PP_3590		aromatic-amino-acid transaminase (EC 2.6.1.57) (from data)	no	0.41
4	PP_4767		amino acid exporter for phenylalanine, threonine	0.46	0.41
5	PP_1418		putative Tricarboxylate transport protein TctC	no	0.40
6	PP_1420		Transcriptional regulatory protein tctD	no	0.38
7	PP_1416		putative Tricarboxylate transport protein TctA	0.23	0.37
8	PP_4621		Homogentisate 1,2-dioxygenase	0.29	0.37
9	PP_3080		tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase	no	0.35
10	PP_1421		putative Sensor histidine kinase TctE	no	0.34
11	PP_1417		putative Tricarboxylate transport protein TctB	no	0.32
12	PP_4922		Phosphomethylpyrimidine synthase	0.45	0.32
13	PP_4490		phenylalanine-4-hydroxylase	no	0.30
14	PP_5086		putative nuclease (SNase domain protein)	0.51	0.30
15	PP_4495		aromatic amino acid transport protein	no	0.29
16	PP_1866		Phospho-2-dehydro-3-deoxyheptonate aldolase	no	0.28
17	PP_5104		thiazole synthase	no	0.27
18	PP_4011		isocitrate dehydrogenase, NADP(+)-specific	0.45	0.26
19	PP_0358		conserved membrane protein of unknown function	0.58	0.25
20	PP_0589		Bcr/CflA family multidrug resistance transporter	0.60	0.25

Or look for negative cofitness