Top cofit genes for PP_3503 from Pseudomonas putida KT2440

Sigma-54 dependent transcriptional regulator
SEED: Sigma-54 dependent transcriptional regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_t11		tRNA-Lys	no	0.25
2	PP_2210		LysR family transcriptional regulator	no	0.24
3	PP_0737		lipid A 3-O-deacylase	no	0.24
4	PP_5338		aspartate ammonia-lyase	no	0.23
5	PP_1527		tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase)	0.14	0.23
6	PP_2549		conserved protein of unknown function	no	0.23
7	PP_0397		protein kinase	no	0.22
8	PP_5166		Sigma-54 dependent transcriptional regulator	no	0.22
9	PP_1623		RNA polymerase, sigma S (sigma 38) factor	0.23	0.22
10	PP_3490		manganese-oxidizing multicopper oxidase	no	0.22
11	PP_0395		putative type IV piliation protein	no	0.22
12	PP_2419		conserved membrane protein of unknown function DUF1624 family	0.30	0.22
13	PP_5157		conserved exported protein of unknown function	0.54	0.21
14	PP_1824		Smr domain protein	0.47	0.21
15	PP_3719		Putrescine-binding periplasmic protein	no	0.21
16	PP_1198		transcriptional regulator, Cro/CI family (higA antitoxin like)	no	0.21
17	PP_0396		conserved protein of unknown function	no	0.21
18	PP_2160		NADPH-dependent 7-cyano-7-deazaguanine reductase	no	0.21
19	PP_1058		conserved protein of unknown function	0.30	0.21
20	PP_2121		putative Lipoprotein	no	0.20

Or look for negative cofitness