Top cofit genes for PP_3484 from Pseudomonas putida KT2440

Response regulator receiver protein
SEED: Predicted secretion system X DNA-binding regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_0164		conserved protein of unknown function	no	0.54
2	PP_0951		Ribosome hibernation promoting factor	no	0.53
3	PP_4337		chemotaxis response regulator protein-glutamate methylesterase of group 1 operon	no	0.51
4	PP_5502		ribosome modulation factor	no	0.50
5	PP_0397		protein kinase	no	0.48
6	PP_0395		putative type IV piliation protein	no	0.48
7	PP_0396		conserved protein of unknown function	no	0.47
8	PP_2862		Undecaprenyl-diphosphatase	no	0.42
9	PP_4375		flagellar chaperone, inhibits premature FliC assembly	no	0.41
10	PP_3833		Response regulator	no	0.39
11	PP_3649		Transcriptional regulator, GntR family	no	0.39
12	PP_4943		putative Glycosyl transferase	no	0.38
13	PP_4364		putative Anti-sigma F factor antagonist	no	0.38
14	PP_4143		conserved protein of unknown function	no	0.38
15	PP_1319		Ubiquinol--cytochrome c reductase, cytochrome c1	no	0.37
16	PP_4380		Flagellar hook-associated protein FlgL	no	0.37
17	PP_4376		flagellar filament capping protein	no	0.37
18	PP_4343		Flagellar biosynthesis protein FlhF	no	0.37
19	PP_0547		UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	no	0.36
20	PP_1318		Cytochrome b	0.28	0.36

Or look for negative cofitness